org.jmol.api
Interface JmolBioResolver
- All Known Implementing Classes:
- Resolver
public interface JmolBioResolver
Method Summary |
void |
addImplicitHydrogenAtoms(JmolAdapter adapter,
int i)
|
Polymer |
buildBioPolymer(Group group,
Group[] groups,
int i,
boolean checkPolymerConnections)
|
void |
clearBioPolymers(Group[] groups,
int groupCount,
java.util.BitSet bsModelsExcluded)
|
Group |
distinguishAndPropagateGroup(Chain chain,
java.lang.String group3,
int seqcode,
int firstAtomIndex,
int maxAtomIndex,
int modelIndex,
int[] specialAtomIndexes,
Atom[] atoms)
|
void |
finalizeHydrogens()
|
void |
initialize(ModelSet modelSet)
|
void |
initializeHydrogenAddition(ModelLoader modelSet,
int bondCount)
|
void |
setHaveHsAlready(boolean b)
|
distinguishAndPropagateGroup
Group distinguishAndPropagateGroup(Chain chain,
java.lang.String group3,
int seqcode,
int firstAtomIndex,
int maxAtomIndex,
int modelIndex,
int[] specialAtomIndexes,
Atom[] atoms)
buildBioPolymer
Polymer buildBioPolymer(Group group,
Group[] groups,
int i,
boolean checkPolymerConnections)
clearBioPolymers
void clearBioPolymers(Group[] groups,
int groupCount,
java.util.BitSet bsModelsExcluded)
initializeHydrogenAddition
void initializeHydrogenAddition(ModelLoader modelSet,
int bondCount)
finalizeHydrogens
void finalizeHydrogens()
setHaveHsAlready
void setHaveHsAlready(boolean b)
addImplicitHydrogenAtoms
void addImplicitHydrogenAtoms(JmolAdapter adapter,
int i)
initialize
void initialize(ModelSet modelSet)