org.jmol.atomdata
Class AtomData

java.lang.Object
  extended by org.jmol.atomdata.AtomData

public class AtomData
extends java.lang.Object


Field Summary
 int adpMode
           
 int atomCount
           
 int[] atomicNumber
           
 int[] atomIndex
           
 int[] atomMolecule
           
 float[] atomRadius
           
 javax.vecmath.Point3f[] atomXyz
           
 java.util.BitSet bsIgnored
           
 java.util.BitSet[] bsMolecules
           
 java.util.BitSet bsSelected
           
 java.lang.String fileName
           
 int firstAtomIndex
           
 int firstModelIndex
           
 float hAtomRadius
           
 javax.vecmath.Point3f[][] hAtoms
           
 int hydrogenAtomCount
           
 int lastModelIndex
           
static int MODE_FILL_COORDS
           
static int MODE_FILL_MOLECULES
           
static int MODE_FILL_MULTIMODEL
           
static int MODE_FILL_RADII
           
static int MODE_GET_ATTACHED_HYDROGENS
           
 int modelIndex
           
 java.lang.String modelName
           
 java.lang.String programInfo
           
 RadiusData radiusData
           
 
Constructor Summary
AtomData()
           
 
Method Summary
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

MODE_FILL_COORDS

public static final int MODE_FILL_COORDS
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Constant Field Values

MODE_FILL_RADII

public static final int MODE_FILL_RADII
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Constant Field Values

MODE_FILL_MOLECULES

public static final int MODE_FILL_MOLECULES
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Constant Field Values

MODE_GET_ATTACHED_HYDROGENS

public static final int MODE_GET_ATTACHED_HYDROGENS
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Constant Field Values

MODE_FILL_MULTIMODEL

public static final int MODE_FILL_MULTIMODEL
See Also:
Constant Field Values

programInfo

public java.lang.String programInfo

fileName

public java.lang.String fileName

modelName

public java.lang.String modelName

modelIndex

public int modelIndex

bsSelected

public java.util.BitSet bsSelected

bsIgnored

public java.util.BitSet bsIgnored

bsMolecules

public java.util.BitSet[] bsMolecules

radiusData

public RadiusData radiusData

firstAtomIndex

public int firstAtomIndex

firstModelIndex

public int firstModelIndex

lastModelIndex

public int lastModelIndex

hAtomRadius

public float hAtomRadius

atomIndex

public int[] atomIndex

atomXyz

public javax.vecmath.Point3f[] atomXyz

atomRadius

public float[] atomRadius

atomicNumber

public int[] atomicNumber

atomMolecule

public int[] atomMolecule

hAtoms

public javax.vecmath.Point3f[][] hAtoms

atomCount

public int atomCount

hydrogenAtomCount

public int hydrogenAtomCount

adpMode

public int adpMode
Constructor Detail

AtomData

public AtomData()