Package org.jmol.util

Interface Summary
JmolNode  
LoggerInterface Interface used for the logging mechanism.
 

Class Summary
ArrayUtil  
Base64  
BinaryDocument  
BitSetUtil  
BoxInfo  
CifDataReader  
ColorEncoder  
CommandHistory Implements a queue for a bash-like command history.
CompoundDocument  
ContactPair  
DCT  
DefaultLogger Default implementation of the logger.
Dimension  
Eigen Eigenvalues and eigenvectors of a real (n x n) symmetric matrix.
Elements  
Escape  
FastBitSet  
Huffman  
Int2IntHash  
Int2IntHash.Entry  
JmolEdge  
JmolMolecule an independent class utilizing only org.jmol.api.JmolNode, not org.jmol.modelset.Atom for use in finding molecules in models and SMILES strings
JpegEncoder  
JpegInfo  
KfDocument  
LimitedLineReader  
Logger Logger mechanism.
Measure  
MeshSurface  
OutputStringBuffer  
Parser  
Point3fi the Point3fi class allows storage of critical information involving an atom, picked bond, or measurement point, including: xyz position screen position screen radius (-1 for a simple point) index (for atoms or for an associated bond that has be picked) associated modelIndex (for measurement points)
Quadric  
Quaternion  
Rectangle  
SimpleUnitCell general-purpose simple unit cell for calculations and as a super-class of unitcell, which is only part of Symmetry allows one-dimensional (polymer) and two-dimensional (slab) periodicity
SlowBitSet  
SurfaceFileTyper  
TempArray  
TextFormat  
TriangleData  
XmlReader  
XmlUtil  
ZipUtil  
 

Enum Summary
JmolEdge.EnumBondOrder