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java.lang.Objectorg.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.SurfaceFileReader
org.jmol.jvxl.readers.VolumeFileReader
org.jmol.jvxl.readers.JaguarReader
class JaguarReader
Field Summary | |
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private float[] |
extents
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Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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atomCount, boundingBox, canDownsample, downsampleFactor, endOfData, isAngstroms, negativeAtomCount, nSurfaces, readerClosed, thePlane |
Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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binarydoc, br, line, next, os |
Constructor Summary | |
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JaguarReader(SurfaceGenerator sg,
java.io.BufferedReader br)
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Method Summary | |
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private void |
readExtents(int voxelVectorIndex)
read the extentx=, extenty=, extentz= lines and cache them then read the npts= line and construct the necessary data |
protected void |
readParameters()
nothing much here |
Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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checkAtomLine, closeReader, getNextVoxelValue, getPlane, getPlaneProcessed, getSurfacePointAndFraction, getValue, getVoxelBitSet, gotoData, initializeSurfaceData, nextVoxel, readSurfaceData, readVolumeData, readVolumeParameters, readVoxelVector, recordData, skipComments, skipData |
Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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discardTempData, getNextQuotedString, getTokens, parseFloat, parseFloat, parseFloatArray, parseFloatArray, parseInt, parseInt, parseIntNext, readLine, setOutputStream, skipTo |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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private float[] extents
Constructor Detail |
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JaguarReader(SurfaceGenerator sg, java.io.BufferedReader br)
Method Detail |
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protected void readParameters() throws java.lang.Exception
readParameters
in class VolumeFileReader
java.lang.Exception
- -- generally a reader issueprivate void readExtents(int voxelVectorIndex) throws java.lang.Exception
voxelVectorIndex
- 0, 1, or 2
java.lang.Exception
- -- generally a reader issue
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