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java.lang.Objectorg.jmol.adapter.smarter.AtomSetCollectionReader
org.jmol.adapter.readers.molxyz.XyzReader
public class XyzReader
Minnesota SuperComputer Center XYZ file format simple symmetry extension via load command: 9/2006 hansonr@stolaf.edu setAtomCoord(atom) applySymmetryAndSetTrajectory() extended to read XYZI files (Bob's invention -- allows isotope numbers) extended to read XYZ files with fractional charges as, for example: http://www.ccl.net/cca/software/SOURCES/FORTRAN/molden/test/reacpth.xyz http://web.archive.org/web/20000120031517/www.msc.edu/msc/docs/xmol/v1.3/g94toxyz.c
Field Summary |
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Constructor Summary | |
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XyzReader()
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Method Summary | |
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protected boolean |
checkLine()
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protected void |
finalizeReader()
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private void |
readAtoms(int modelAtomCount)
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private void |
skipAtomSet(int modelAtomCount)
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public XyzReader()
Method Detail |
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protected boolean checkLine() throws java.lang.Exception
checkLine
in class AtomSetCollectionReader
java.lang.Exception
protected void finalizeReader() throws java.lang.Exception
finalizeReader
in class AtomSetCollectionReader
java.lang.Exception
private void skipAtomSet(int modelAtomCount) throws java.lang.Exception
java.lang.Exception
private void readAtoms(int modelAtomCount) throws java.lang.Exception
java.lang.Exception
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