org.jmol.util
Interface JmolNode
- All Known Implementing Classes:
- Atom, SmilesAtom
public interface JmolNode
set
void set(float x,
float y,
float z)
getAtomSite
int getAtomSite()
getBondedAtomIndex
int getBondedAtomIndex(int j)
getCovalentHydrogenCount
int getCovalentHydrogenCount()
getEdges
JmolEdge[] getEdges()
getElementNumber
short getElementNumber()
getFormalCharge
int getFormalCharge()
getIndex
int getIndex()
getIsotopeNumber
short getIsotopeNumber()
getModelIndex
int getModelIndex()
getValence
int getValence()
getCovalentBondCount
int getCovalentBondCount()
getImplicitHydrogenCount
int getImplicitHydrogenCount()
getAtomicAndIsotopeNumber
short getAtomicAndIsotopeNumber()
getAtomName
java.lang.String getAtomName()
getBioStructureTypeName
java.lang.String getBioStructureTypeName()
getGroup1
java.lang.String getGroup1(char c0)
getGroup3
java.lang.String getGroup3(boolean allowNull)
getResno
int getResno()
getChainID
char getChainID()
getOffsetResidueAtom
int getOffsetResidueAtom(java.lang.String name,
int offset)
getCrossLinkLeadAtomIndexes
boolean getCrossLinkLeadAtomIndexes(java.util.List<java.lang.Integer> vReturn)
getGroupBits
void getGroupBits(java.util.BitSet bs)
isLeadAtom
boolean isLeadAtom()
isCrossLinked
boolean isCrossLinked(JmolNode node)
isProtein
boolean isProtein()
isNucleic
boolean isNucleic()
isDna
boolean isDna()
isRna
boolean isRna()
isPurine
boolean isPurine()
isPyrimidine
boolean isPyrimidine()
isDeleted
boolean isDeleted()