org.jmol.util
Class ContactPair

java.lang.Object
  extended by org.jmol.util.ContactPair

public class ContactPair
extends java.lang.Object


Field Summary
 float chord
           
 int contactType
           
 float d
           
 Atom[] myAtoms
           
private  int oldType
           
 javax.vecmath.Point3f pt
           
 float[] radii
           
 float score
           
 float[] vdws
           
 double vdwVolume
           
 double volume
           
 float xVdwClash
           
 
Constructor Summary
ContactPair(Atom[] atoms, int i1, int i2, float R, float r, float vdwA, float vdwB)
           
 
Method Summary
private  void getVolume()
           
 boolean setForVdwClash(boolean isVdw)
           
 void switchAtoms()
           
 java.lang.String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

radii

public float[] radii

vdws

public float[] vdws

myAtoms

public Atom[] myAtoms

pt

public javax.vecmath.Point3f pt

volume

public double volume

vdwVolume

public double vdwVolume

score

public float score

d

public float d

chord

public float chord

contactType

public int contactType

xVdwClash

public float xVdwClash

oldType

private int oldType
Constructor Detail

ContactPair

public ContactPair(Atom[] atoms,
                   int i1,
                   int i2,
                   float R,
                   float r,
                   float vdwA,
                   float vdwB)
Method Detail

getVolume

private void getVolume()

setForVdwClash

public boolean setForVdwClash(boolean isVdw)

switchAtoms

public void switchAtoms()

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object