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| CigarOperator (Operation operation, uint32_t count) |
| Set the cigar operator with the specified operation and count length. More...
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char | getChar () const |
| Get the character code (M, I, D, N, S, H, or P) associated with this operation. More...
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bool | operator== (const CigarOperator &rhs) const |
| Compare only on the operator, true if they are the same, false if not. Match and mismatch are considered the same for CIGAR strings.
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bool | operator!= (const CigarOperator &rhs) const |
| Compare only on the operator, false if they are the same, true if not. Match and mismatch are considered the same for CIGAR strings.
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Definition at line 107 of file Cigar.h.
◆ CigarOperator()
Cigar::CigarOperator::CigarOperator |
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Operation |
operation, |
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uint32_t |
count |
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inline |
Set the cigar operator with the specified operation and count length.
Definition at line 118 of file Cigar.h.
119 : operation(operation), count(count) {};
◆ getChar()
char Cigar::CigarOperator::getChar |
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const |
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inline |
Get the character code (M, I, D, N, S, H, or P) associated with this operation.
Definition at line 127 of file Cigar.h.
References Cigar::del, Cigar::hardClip, Cigar::insert, Cigar::match, Cigar::mismatch, Cigar::none, Cigar::pad, Cigar::skip, and Cigar::softClip.
insertion to the reference (the query sequence contains bases that have no corresponding base in the ...
Padding (not in reference or query). Associated with CIGAR Operation "P".
skipped region from the reference (the reference contains bases that have no corresponding base in th...
no operation has been set.
Hard clip on the read (clipped sequence not present in the query sequence or reference). Associated with CIGAR Operation "H".
mismatch operation. Associated with CIGAR Operation "M"
Soft clip on the read (clipped sequence present in the query sequence, but not in reference)...
match/mismatch operation. Associated with CIGAR Operation "M"
deletion from the reference (the reference contains bases that have no corresponding base in the quer...
The documentation for this struct was generated from the following file: