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| TCGAbiolinks::analysis | 7. Analyzing and visualizing TCGA data | HTML | source | R code | |
| TCGAbiolinks::casestudy | 8. Case Studies | HTML | source | R code | |
| TCGAbiolinks::classifiers | 10. Classifiers | HTML | source | R code | |
| TCGAbiolinks::clinical | "4. Clinical data" | HTML | source | R code | |
| TCGAbiolinks::download_prepare | "3. Downloading and preparing files for analysis" | HTML | source | R code | |
| TCGAbiolinks::extension | "10. TCGAbiolinks_Extension" | HTML | source | R code | |
| TCGAbiolinks::gui | "9. Graphical User Interface (GUI)" | HTML | source | R code | |
| TCGAbiolinks::index | "1. Introduction" | HTML | source | R code | |
| TCGAbiolinks::mutation | "5. Mutation data" | HTML | source | R code | |
| TCGAbiolinks::query | "2. Searching GDC database" | HTML | source | R code | |
| TCGAbiolinks::subtypes | 6. Compilation of TCGA molecular subtypes | HTML | source | R code |