RDKit
Open-source cheminformatics and machine learning.
- c -
CachedMolHolder() :
RDKit::CachedMolHolder
CachedSmilesMolHolder() :
RDKit::CachedSmilesMolHolder
CachedTrustedSmilesMolHolder() :
RDKit::CachedTrustedSmilesMolHolder
calcChiralVolume() :
DistGeom::ChiralViolationContrib
calcEnergy() :
ForceFields::ForceField
calcExplicitValence() :
RDKit::Atom
calcGrad() :
ForceFields::ForceField
calcImplicitValence() :
RDKit::Atom
calcMetricMatrix() :
RDDataManip::MetricMatrixCalc< vectType, entryType >
calcPerpendicular() :
RDKit::MolDraw2D
calculateScale() :
RDKit::MolDraw2D
canGrowBiggerThan() :
RDKit::FMCS::Seed
canon_atom() :
RDKit::Canon::canon_atom
canonicalize() :
RDKit::MolStandardize::TautomerCanonicalizer
canonicalizeOrientation() :
RDDepict::EmbeddedFrag
canSerialize() :
RDKit::CustomPropHandler
,
RDKit::DataStructsExplicitBitVecPropHandler
CartesianProductStrategy() :
RDKit::CartesianProductStrategy
Catalog() :
RDCatalog::Catalog< entryType, paramType >
ChargeCorrection() :
RDKit::MolStandardize::ChargeCorrection
ChargeFix() :
RDKit::StructureCheck::ChargeFix
checkForEnd() :
RDKit::ForwardSDMolSupplier
checkIfMatchAndAppend() :
RDKit::FMCS::MaximumCommonSubgraph
checkMolStructure() :
RDKit::StructureCheck::StructChecker
checkValid() :
DistGeom::BoundsMatrix
ChemicalFeature() :
ChemicalFeatures::ChemicalFeature
ChemicalReaction() :
RDKit::ChemicalReaction
ChemicalReactionException() :
RDKit::ChemicalReactionException
ChemicalReactionParserException() :
RDKit::ChemicalReactionParserException
ChiralAtomCompareFunctor() :
RDKit::Canon::ChiralAtomCompareFunctor
ChiralSet() :
DistGeom::ChiralSet
ChiralViolationContrib() :
DistGeom::ChiralViolationContrib
choose() :
RDKit::MolStandardize::LargestFragmentChooser
cleanup() :
RDKit::FPBReader
cleanup_rdvalue() :
RDKit::RDValue
CleanupParameters() :
RDKit::MolStandardize::CleanupParameters
clear() :
Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
RDKit::FMCS::DuplicatedSeedCache
,
RDKit::FMCS::RingMatchTableSet
,
RDKit::FMCS::SeedSet
,
RDKit::FMCS::TargetMatch
,
RDKit::FMCS::TArray2D< T >
,
RDKit::RDProps
,
RDKit::RWMol
,
RDKit::StructureCheck::StructCheckerOptions
,
RDKit::Trajectory
clearAllAtomBookmarks() :
RDKit::ROMol
clearAllBondBookmarks() :
RDKit::ROMol
clearAtomBookmark() :
RDKit::ROMol
clearBits() :
BitVect
,
ExplicitBitVect
,
SparseBitVect
clearBondBookmark() :
RDKit::ROMol
clearCache() :
RDKit::MolChemicalFeature
clearComputedProps() :
RDKit::RDProps
,
RDKit::ROMol
clearConformers() :
RDKit::ROMol
clearDrawing() :
RDKit::MolDraw2D
,
RDKit::MolDraw2DCairo
,
RDKit::MolDraw2DQt
,
RDKit::MolDraw2DSVG
,
RDKit::MolDraw2Dwx
clearProp() :
RDKit::FilterCatalogEntry
,
RDKit::FragCatalogEntry
,
RDKit::MolCatalogEntry
,
RDKit::RDProps
ClearTee() :
boost::logging::rdLogger
clearVal() :
RDKit::Dict
clone() :
RDKit::AtomInvariantsGenerator
,
RDKit::AtomPair::AtomPairAtomInvGenerator
,
RDKit::BondInvariantsGenerator
,
RDKit::CustomPropHandler
,
RDKit::DataStructsExplicitBitVecPropHandler
Clone() :
RDKit::FilterMatcherBase
clone() :
RDKit::MorganFingerprint::MorganAtomInvGenerator
,
RDKit::MorganFingerprint::MorganBondInvGenerator
,
RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator
,
RDKit::RDKitFP::RDKitFPAtomInvGenerator
close() :
RDKit::MolWriter
,
RDKit::PDBWriter
,
RDKit::SDWriter
,
RDKit::SmilesWriter
,
RDKit::TDTWriter
cluster() :
RDPickers::HierarchicalClusterPicker
collectVotes() :
RDInfoTheory::BitCorrMatGenerator
colour() :
RDKit::MolDraw2D
commonArgumentsString() :
RDKit::FingerprintArguments< OutputType >
compact() :
RDPickers::LeaderPickerState< T >
compact_next() :
RDPickers::LeaderPickerState< T >
compare() :
RDKit::Canon::bondholder
compareParams() :
RDGeom::UniformGrid3D
Composition2N() :
RDKit::FMCS::Composition2N
compute2N() :
RDKit::FMCS::Composition2N
computeBox() :
RDDepict::EmbeddedFrag
computeCostMatrix() :
RDKit::MolAlign::LAP
computeDistMat() :
RDDepict::EmbeddedFrag
computeKey() :
RDKit::FMCS::SubstructureCache::HashKey
computeMinCostPath() :
RDKit::MolAlign::LAP
computeMMFFCharges() :
RDKit::MMFF::MMFFMolProperties
computeProperties() :
RDKit::Descriptors::Properties
computeRemainingSize() :
RDKit::FMCS::Seed
computeRingMatchTable() :
RDKit::FMCS::RingMatchTableSet
Conformer() :
RDKit::Conformer
ConformerException() :
RDKit::ConformerException
ConrecSegment() :
conrec::ConrecSegment
ConstBondIterator_() :
RDKit::ConstBondIterator_
contribs() :
ForceFields::ForceField
copy() :
DistGeom::ChiralViolationContrib
,
DistGeom::DistViolationContrib
,
DistGeom::FourthDimContrib
,
ForceFields::CrystalFF::TorsionAngleContribM6
,
ForceFields::ForceFieldContrib
,
ForceFields::MMFF::AngleBendContrib
,
ForceFields::MMFF::AngleConstraintContrib
,
ForceFields::MMFF::BondStretchContrib
,
ForceFields::MMFF::DistanceConstraintContrib
,
ForceFields::MMFF::EleContrib
,
ForceFields::MMFF::OopBendContrib
,
ForceFields::MMFF::PositionConstraintContrib
,
ForceFields::MMFF::StretchBendContrib
,
ForceFields::MMFF::TorsionAngleContrib
,
ForceFields::MMFF::TorsionConstraintContrib
,
ForceFields::MMFF::VdWContrib
,
ForceFields::UFF::AngleBendContrib
,
ForceFields::UFF::AngleConstraintContrib
,
ForceFields::UFF::BondStretchContrib
,
ForceFields::UFF::DistanceConstraintContrib
,
ForceFields::UFF::InversionContrib
,
ForceFields::UFF::PositionConstraintContrib
,
ForceFields::UFF::TorsionAngleContrib
,
ForceFields::UFF::TorsionConstraintContrib
,
ForceFields::UFF::vdWContrib
,
Queries::AndQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::EqualityQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::GreaterEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::GreaterQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::LessEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::LessQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::OrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::RangeQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::XOrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
RDGeom::Point2D
,
RDGeom::Point3D
,
RDGeom::Point
,
RDGeom::PointND
,
RDKit::Atom
,
RDKit::AtomKekulizeException
,
RDKit::AtomMonomerInfo
,
RDKit::AtomPDBResidueInfo
,
RDKit::AtomRingQuery
,
RDKit::AtomSanitizeException
,
RDKit::AtomValenceException
,
RDKit::Bond
,
RDKit::CartesianProductStrategy
,
RDKit::EnumerationStrategyBase
,
RDKit::EvenSamplePairsStrategy
,
RDKit::ExclusionList
,
RDKit::FilterHierarchyMatcher
,
RDKit::FilterMatcherBase
,
RDKit::FilterMatchOps::And
,
RDKit::FilterMatchOps::Not
,
RDKit::FilterMatchOps::Or
,
RDKit::HasPropQuery< TargetPtr >
,
RDKit::HasPropWithValueQuery< TargetPtr, T >
,
RDKit::HasPropWithValueQuery< TargetPtr, ExplicitBitVect >
,
RDKit::HasPropWithValueQuery< TargetPtr, std::string >
,
RDKit::KekulizeException
,
RDKit::MolSanitizeException
,
RDKit::MolStandardize::FragmentValidation
,
RDKit::MolStandardize::IsotopeValidation
,
RDKit::MolStandardize::MolVSValidations
,
RDKit::MolStandardize::NeutralValidation
,
RDKit::MolStandardize::NoAtomValidation
,
RDKit::QueryAtom
,
RDKit::QueryBond
,
RDKit::RandomSampleAllBBsStrategy
,
RDKit::RandomSampleStrategy
,
RDKit::RecursiveStructureQuery
,
RDKit::SmartsMatcher
countMatches() :
RDKit::SubstructLibrary
createFromParent() :
RDKit::FMCS::Seed
createPartialBond() :
RDKit::RWMol
CrippenParamCollection() :
RDKit::Descriptors::CrippenParamCollection
crossProduct() :
RDGeom::Point3D
CXXAtomIter() :
RDKit::CXXAtomIterator< Graph, Vertex >::CXXAtomIter
CXXAtomIterator() :
RDKit::CXXAtomIterator< Graph, Vertex >
CXXBondIter() :
RDKit::CXXBondIterator< Graph, Edge >::CXXBondIter
CXXBondIterator() :
RDKit::CXXBondIterator< Graph, Edge >
Generated on Fri Jun 12 2020 19:04:45 for RDKit by
1.8.17