Here is a list of all class members with links to the classes they belong to:
- a -
- a
: RDKit::DrawColour
, RDKit::RDTypeTag::detail::Value
- A_i
: ForceFields::MMFF::MMFFVdW
- a_ij
: ForceFields::MMFF::MMFFHerschbachLaurie
- accumulateVotes()
: RDInfoTheory::InfoBitRanker
- AcidBaseCatalogEntry()
: RDKit::MolStandardize::AcidBaseCatalogEntry
- AcidBaseCatalogParams()
: RDKit::MolStandardize::AcidBaseCatalogParams
- acidbaseFile
: RDKit::MolStandardize::CleanupParameters
- AcidicAtoms
: RDKit::StructureCheck::StructCheckerOptions
- AcidityLimit
: RDKit::StructureCheck::StructCheckerOptions
- add()
: RDKit::FMCS::DuplicatedSeedCache
, RDKit::FMCS::SeedSet
, RDKit::FMCS::SubstructureCache
, RDKit::RGroupDecomposition
- addAgentTemplate()
: RDKit::ChemicalReaction
- addAtom()
: RDKit::FMCS::DuplicatedSeedCache::TKey
, RDKit::FMCS::Graph
, RDKit::FMCS::Seed
, RDKit::RWMol
- addAtomWithBookmark()
: RDKit::SubstanceGroup
- addAtomWithIdx()
: RDKit::SubstanceGroup
- addAttachPoint()
: RDKit::SubstanceGroup
- addBinary()
: RDKit::CachedMolHolder
- addBond()
: RDKit::FMCS::DuplicatedSeedCache::TKey
, RDKit::FMCS::Graph
, RDKit::FMCS::Seed
, RDKit::RWMol
- addBondWithBookmark()
: RDKit::SubstanceGroup
- addBondWithIdx()
: RDKit::SubstanceGroup
- addBracket()
: RDKit::SubstanceGroup
- addCatalog()
: RDKit::FilterCatalogParams
- addChild()
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
, RDKit::FilterHierarchyMatcher
- addConformer()
: RDKit::ROMol
- addConformersToMol()
: RDKit::Trajectory
- addCState()
: RDKit::SubstanceGroup
- addCustomPropHandler()
: RDKit::MolPickler
- addEdge()
: RDCatalog::HierarchCatalog< entryType, paramType, orderType >
- addEntry()
: RDCatalog::Catalog< entryType, paramType >
, RDCatalog::HierarchCatalog< entryType, paramType, orderType >
, RDKit::FilterCatalog
- addFeatureDef()
: RDKit::MolChemicalFeatureFactory
- addFingerprint()
: RDKit::FPHolderBase
- addFragsFromMol()
: RDKit::FragCatGenerator
- additionalAtomLabelPadding
: RDKit::MolDrawOptions
- addMol()
: RDKit::CachedMolHolder
, RDKit::CachedSmilesMolHolder
, RDKit::CachedTrustedSmilesMolHolder
, RDKit::FPHolderBase
, RDKit::MolBundle
, RDKit::MolHolder
, RDKit::MolHolderBase
, RDKit::SubstructLibrary
- addMoleculeMetadata()
: RDKit::MolDraw2DSVG
- addNonRingAtom()
: RDDepict::EmbeddedFrag
- addParentAtomWithBookmark()
: RDKit::SubstanceGroup
- addParentAtomWithIdx()
: RDKit::SubstanceGroup
- addPattern()
: RDKit::ExclusionList
- addPoint()
: RDFeatures::ImplicitFeature< FAMILYMARKER, TYPEMARKER, LOCTYPE >
- addProductTemplate()
: RDKit::ChemicalReaction
- addReactantTemplate()
: RDKit::ChemicalReaction
- addReader()
: RDKit::MultiFPBReader
- addRing()
: RDKit::RingInfo
- addSmiles()
: RDKit::CachedSmilesMolHolder
, RDKit::CachedTrustedSmilesMolHolder
- addSnapshot()
: RDKit::Trajectory
- addTargetBondRingsIndeces()
: RDKit::FMCS::RingMatchTableSet
- adjustDegree
: RDKit::MolOps::AdjustQueryParameters
- adjustDegreeFlags
: RDKit::MolOps::AdjustQueryParameters
- adjustHeavyDegree
: RDKit::MolOps::AdjustQueryParameters
- adjustHeavyDegreeFlags
: RDKit::MolOps::AdjustQueryParameters
- AdjustQueryParameters()
: RDKit::MolOps::AdjustQueryParameters
- adjustRingChain
: RDKit::MolOps::AdjustQueryParameters
- adjustRingChainFlags
: RDKit::MolOps::AdjustQueryParameters
- adjustRingCount
: RDKit::MolOps::AdjustQueryParameters
- adjustRingCountFlags
: RDKit::MolOps::AdjustQueryParameters
- agentWeight
: RDKit::ReactionFingerprintParams
- aid
: RDDepict::EmbeddedAtom
- aIdx
: RDKit::SubstanceGroup::AttachPoint
- ALIAS_CONVERSION_FAILED
: RDKit::StructureCheck::StructChecker
- align()
: RDKit::MolAlign::O3A
- alignment
: RDKit::RGroupDecompositionParameters
- ALL
: RDKit::FilterCatalogParams
- ALLOW_CHARGE_SEPARATION
: RDKit::ResonanceMolSupplier
- ALLOW_INCOMPLETE_OCTETS
: RDKit::ResonanceMolSupplier
- allowCXSMILES
: RDKit::SmilesParserParams
- AllowedAtomsValidation()
: RDKit::MolStandardize::AllowedAtomsValidation
- Alpha
: RDKit::StructureCheck::StructCheckerOptions
- alpha_i
: ForceFields::MMFF::MMFFVdW
- alpha_inc_used
: RDKit::StructureCheck::IncEntry
- AlphaInc
: RDKit::StructureCheck::IncEntry
- AlphaPathTable
: RDKit::StructureCheck::StructCheckerOptions
- And()
: RDKit::FilterMatchOps::And
- AndQuery()
: Queries::AndQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
- angle
: RDDepict::EmbeddedAtom
- AngleBendContrib()
: ForceFields::MMFF::AngleBendContrib
, ForceFields::UFF::AngleBendContrib
- AngleConstraintContrib()
: ForceFields::MMFF::AngleConstraintContrib
, ForceFields::UFF::AngleConstraintContrib
- angles
: ForceFields::CrystalFF::CrystalFFDetails
- angleTo()
: RDGeom::Point2D
, RDGeom::Point3D
, RDGeom::PointND
- annotateProperties()
: RDKit::Descriptors::Properties
- append()
: RDKit::MolAlign::O3AConstraintVect
- ApplyMask
: RDKit::RDValue
- ApplyPtrMask
: RDKit::RDValue
- applyTautomer()
: RDKit::StructureCheck::StructCheckTautomer
- argless()
: Rankers::argless< T >
- arom
: ForceFields::MMFF::MMFFProp
- AROMATIC
: RDKit::Bond
- AromaticAtomIterator_()
: RDKit::AromaticAtomIterator_< Atom_, Mol_ >
- aromaticMatchesConjugated
: RDKit::SubstructMatchParameters
- aromatizeIfPossible
: RDKit::MolOps::AdjustQueryParameters
- assign()
: RDNumeric::Matrix< TYPE >
, RDNumeric::Vector< TYPE >
- at()
: RDKit::FMCS::TArray2D< T >
- atEnd()
: RDKit::ForwardSDMolSupplier
, RDKit::MolSupplier
, RDKit::PDBMolSupplier
, RDKit::ResonanceMolSupplier
, RDKit::SDMolSupplier
, RDKit::SmilesMolSupplier
, RDKit::TDTMolSupplier
- atno
: ForceFields::MMFF::MMFFProp
- Atom()
: RDKit::Atom
- atom
: RDKit::Canon::canon_atom
, RDKit::Canon::MolStackUnion
- atom1Label
: RDKit::MolFragmenter::FragmenterBondType
- atom1Type
: RDKit::MolFragmenter::FragmenterBondType
- atom2Label
: RDKit::MolFragmenter::FragmenterBondType
- atom2Type
: RDKit::MolFragmenter::FragmenterBondType
- ATOM_CHARGE
: RDKit::MolPickler
- ATOM_CHECK_FAILED
: RDKit::StructureCheck::StructChecker
- ATOM_CHIRALTAG
: RDKit::MolPickler
- ATOM_CLASH
: RDKit::StructureCheck::StructChecker
- ATOM_DUMMYLABEL
: RDKit::MolPickler
- ATOM_INDEX
: RDKit::MolPickler
- ATOM_ISAROMATIC
: RDKit::MolPickler
- ATOM_MAPNUMBER
: RDKit::MolPickler
- ATOM_MASS
: RDKit::MolPickler
- ATOM_NEXPLICIT
: RDKit::MolPickler
- ATOM_NUMBER
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_ALTLOC
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_CHAINID
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_INSERTIONCODE
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_ISHETEROATOM
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_OCCUPANCY
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_RESIDUENAME
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_RESIDUENUMBER
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_SECONDARYSTRUCTURE
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_SEGMENTNUMBER
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_SERIALNUMBER
: RDKit::MolPickler
- ATOM_PDB_RESIDUE_TEMPFACTOR
: RDKit::MolPickler
- ATOM_POS
: RDKit::MolPickler
- AtomAcidity
: RDKit::StructureCheck::StructCheckerOptions
- atomColourPalette
: RDKit::MolDrawOptions
- AtomCompareCalls
: RDKit::FMCS::ExecStatistics
- AtomCompareFunctor()
: RDKit::Canon::AtomCompareFunctor
- AtomCompareParameters
: RDKit::MCSParameters
- atomCoords()
: RDKit::MolDraw2D
- atomCounts
: RDKit::AdditionalOutput
- AtomFunctorCalls
: RDKit::FMCS::ExecStatistics
- atomicData()
: RDKit::atomicData
- AtomicNum()
: RDKit::atomicData
- AtomIterator_()
: RDKit::AtomIterator_< Atom_, Mol_ >
- AtomKekulizeException()
: RDKit::AtomKekulizeException
- atomLabelDeuteriumTritium
: RDKit::MolDrawOptions
- atomLabels
: RDKit::MolDrawOptions
- AtomMatchTable
: RDKit::FMCS::Target
- AtomMonomerInfo()
: RDKit::AtomMonomerInfo
- AtomMonomerType
: RDKit::AtomMonomerInfo
- atomNums
: ForceFields::CrystalFF::CrystalFFDetails
- AtomPairArguments()
: RDKit::AtomPair::AtomPairArguments< OutputType >
- AtomPairAtomEnv()
: RDKit::AtomPair::AtomPairAtomEnv< OutputType >
- AtomPairAtomInvGenerator()
: RDKit::AtomPair::AtomPairAtomInvGenerator
- atomPairs
: RDKit::FilterMatch
- AtomPDBResidueInfo()
: RDKit::AtomPDBResidueInfo
- AtomPtrContainer
: RDKit::MolChemicalFeature
- AtomPtrContainer_CI
: RDKit::MolChemicalFeature
- atomRegions
: RDKit::MolDrawOptions
- AtomRingQuery()
: RDKit::AtomRingQuery
- atomRings()
: RDKit::RingInfo
- Atoms
: RDKit::FMCS::MolFragment
- atoms()
: RDKit::ROMol
- Atoms
: RDKit::StructureCheck::Neighbourhood
- AtomSanitizeException()
: RDKit::AtomSanitizeException
- AtomsIdx
: RDKit::FMCS::MolFragment
- AtomSymbol
: RDKit::StructureCheck::AugmentedAtom
, RDKit::StructureCheck::IncEntry
, RDKit::StructureCheck::Ligand
- atomSyms()
: RDKit::MolDraw2D
- atomToBits
: RDKit::AdditionalOutput
- AtomTyper
: RDKit::MCSParameters
- AtomTypeScheme
: RDKit::MolAlign::O3A
- AtomValenceException()
: RDKit::AtomValenceException
- AttribType()
: RDKit::SLNParse::AttribType
- AugmentedAtom()
: RDKit::StructureCheck::AugmentedAtom
- AugmentedAtomPairs
: RDKit::StructureCheck::StructCheckerOptions
- autoGetLabels()
: RDKit::RGroupDecompositionParameters