Here is a list of all class members with links to the classes they belong to:
- c -
- C
: RDKit::MolDraw2D
- CachedMolHolder()
: RDKit::CachedMolHolder
- CachedSmilesMolHolder()
: RDKit::CachedSmilesMolHolder
- CachedTrustedSmilesMolHolder()
: RDKit::CachedTrustedSmilesMolHolder
- calcChiralVolume()
: DistGeom::ChiralViolationContrib
- calcEnergy()
: ForceFields::ForceField
- calcExplicitValence()
: RDKit::Atom
- calcGrad()
: ForceFields::ForceField
- calcImplicitValence()
: RDKit::Atom
- calcMetricMatrix()
: RDDataManip::MetricMatrixCalc< vectType, entryType >
- calcPerpendicular()
: RDKit::MolDraw2D
- calculateScale()
: RDKit::MolDraw2D
- Canceled
: RDKit::MCSResult
- canGrowBiggerThan()
: RDKit::FMCS::Seed
- canon_atom()
: RDKit::Canon::canon_atom
- canonicalize()
: RDKit::MolStandardize::TautomerCanonicalizer
- canonicalizeOrientation()
: RDDepict::EmbeddedFrag
- canSerialize()
: RDKit::CustomPropHandler
, RDKit::DataStructsExplicitBitVecPropHandler
- CartesianProductStrategy()
: RDKit::CartesianProductStrategy
- CAT_GRAPH_TRAITS
: RDCatalog::HierarchCatalog< entryType, paramType, orderType >
- Catalog()
: RDCatalog::Catalog< entryType, paramType >
- CatalogGraph
: RDCatalog::HierarchCatalog< entryType, paramType, orderType >
- ccw
: RDDepict::EmbeddedAtom
- CENTROID
: RDPickers::HierarchicalClusterPicker
- char_type
: boost_adaptbx::python::streambuf
- Charge
: RDKit::MolStandardize::ChargeCorrection
, RDKit::StructureCheck::AugmentedAtom
, RDKit::StructureCheck::Ligand
- ChargeCorrection()
: RDKit::MolStandardize::ChargeCorrection
- ChargeFix()
: RDKit::StructureCheck::ChargeFix
- ChargeIncTable
: RDKit::StructureCheck::StructCheckerOptions
- Charges
: RDKit::MolStandardize::TautomerTransform
- CheckCollisions
: RDKit::StructureCheck::StructCheckerOptions
- checkForEnd()
: RDKit::ForwardSDMolSupplier
- checkIfMatchAndAppend()
: RDKit::FMCS::MaximumCommonSubgraph
- checkMolStructure()
: RDKit::StructureCheck::StructChecker
- CheckStereo
: RDKit::StructureCheck::StructCheckerOptions
- checkValid()
: DistGeom::BoundsMatrix
- ChemicalFeature()
: ChemicalFeatures::ChemicalFeature
- ChemicalReaction()
: RDKit::ChemicalReaction
- ChemicalReactionException()
: RDKit::ChemicalReactionException
- ChemicalReactionParserException()
: RDKit::ChemicalReactionParserException
- chi
: ForceFields::MMFF::MMFFCovRadPauEle
- CHI_OTHER
: RDKit::Atom
- CHI_TETRAHEDRAL_CCW
: RDKit::Atom
- CHI_TETRAHEDRAL_CW
: RDKit::Atom
- CHI_UNSPECIFIED
: RDKit::Atom
- CHILD_TYPE
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
- CHILD_VECT
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
- CHILD_VECT_CI
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
- CHILD_VECT_I
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
- ChiralAtomCompareFunctor()
: RDKit::Canon::ChiralAtomCompareFunctor
- ChiralAtomsHash
: RDKit::MolHash::HashSet
- ChiralBondsHash
: RDKit::MolHash::HashSet
- ChiralityHash
: RDKit::MolHash::HashSet
- ChiralSet()
: DistGeom::ChiralSet
- ChiralType
: RDKit::Atom
- ChiralViolationContrib()
: DistGeom::ChiralViolationContrib
- CHISQUARE
: RDInfoTheory::InfoBitRanker
- choose()
: RDKit::MolStandardize::LargestFragmentChooser
- chunkSize
: RDKit::RGroupDecompositionParameters
- circleAtoms
: RDKit::MolDrawOptions
- CISTRANS
: RDDepict::EmbeddedAtom
- CisTransNbr
: RDDepict::EmbeddedAtom
- cleanup()
: RDKit::FPBReader
- cleanup_rdvalue()
: RDKit::RDValue
- CleanupParameters()
: RDKit::MolStandardize::CleanupParameters
- clear()
: Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, RDKit::FMCS::DuplicatedSeedCache
, RDKit::FMCS::RingMatchTableSet
, RDKit::FMCS::SeedSet
, RDKit::FMCS::TargetMatch
, RDKit::FMCS::TArray2D< T >
, RDKit::RDProps
, RDKit::RWMol
, RDKit::StructureCheck::StructCheckerOptions
, RDKit::Trajectory
- clearAllAtomBookmarks()
: RDKit::ROMol
- clearAllBondBookmarks()
: RDKit::ROMol
- clearAtomBookmark()
: RDKit::ROMol
- clearBackground
: RDKit::MolDrawOptions
- clearBits()
: BitVect
, ExplicitBitVect
, SparseBitVect
- clearBondBookmark()
: RDKit::ROMol
- clearCache()
: RDKit::MolChemicalFeature
- clearComputedProps()
: RDKit::RDProps
, RDKit::ROMol
- clearConformers()
: RDKit::ROMol
- clearConfs
: RDKit::DGeomHelpers::EmbedParameters
- clearDrawing()
: RDKit::MolDraw2D
, RDKit::MolDraw2DCairo
, RDKit::MolDraw2DQt
, RDKit::MolDraw2DSVG
, RDKit::MolDraw2Dwx
- clearProp()
: RDKit::FilterCatalogEntry
, RDKit::FragCatalogEntry
, RDKit::MolCatalogEntry
, RDKit::RDProps
- ClearTee()
: boost::logging::rdLogger
- clearVal()
: RDKit::Dict
- CLINK
: RDPickers::HierarchicalClusterPicker
- clone()
: RDKit::AtomInvariantsGenerator
, RDKit::AtomPair::AtomPairAtomInvGenerator
, RDKit::BondInvariantsGenerator
, RDKit::CustomPropHandler
, RDKit::DataStructsExplicitBitVecPropHandler
- Clone()
: RDKit::FilterMatcherBase
- clone()
: RDKit::MorganFingerprint::MorganAtomInvGenerator
, RDKit::MorganFingerprint::MorganBondInvGenerator
, RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator
, RDKit::RDKitFP::RDKitFPAtomInvGenerator
- close()
: RDKit::MolWriter
, RDKit::PDBWriter
, RDKit::SDWriter
, RDKit::SmilesWriter
, RDKit::TDTWriter
- cluster()
: RDPickers::HierarchicalClusterPicker
- ClusterMethod
: RDPickers::HierarchicalClusterPicker
- coeff
: RDKit::MolAlign::O3AFuncData
- CollectionType
: RDKit::MolChemicalFeatureDef
- collectVotes()
: RDInfoTheory::BitCorrMatGenerator
- CollisionLimitPercent
: RDKit::StructureCheck::StructCheckerOptions
- colour()
: RDKit::MolDraw2D
- colourMap
: RDKit::MolDraw2DUtils::ContourParams
- comment
: RDKit::FilterData_t
- commonArgumentsString()
: RDKit::FingerprintArguments< OutputType >
- compact()
: RDPickers::LeaderPickerState< T >
- compact_next()
: RDPickers::LeaderPickerState< T >
- compare()
: RDKit::Canon::bondholder
- CompareFunctionsUserData
: RDKit::MCSParameters
- compareParams()
: RDGeom::UniformGrid3D
- CompleteRingsOnly
: RDKit::MCSBondCompareParameters
- Composition2N()
: RDKit::FMCS::Composition2N
- compute2N()
: RDKit::FMCS::Composition2N
- computeBox()
: RDDepict::EmbeddedFrag
- computeCostMatrix()
: RDKit::MolAlign::LAP
- computeDistMat()
: RDDepict::EmbeddedFrag
- computeKey()
: RDKit::FMCS::SubstructureCache::HashKey
- computeMinCostPath()
: RDKit::MolAlign::LAP
- computeMMFFCharges()
: RDKit::MMFF::MMFFMolProperties
- computeProperties()
: RDKit::Descriptors::Properties
- computeRemainingSize()
: RDKit::FMCS::Seed
- computeRingMatchTable()
: RDKit::FMCS::RingMatchTableSet
- Cond
: RDKit::StructureCheck::PathEntry
- cond_used
: RDKit::StructureCheck::PathEntry
- Conformer()
: RDKit::Conformer
- ConformerException()
: RDKit::ConformerException
- ConrecSegment()
: conrec::ConrecSegment
- const_iterator
: RDKit::FMCS::SeedSet
- CONST_SENTRY
: RDKit::FilterCatalog
- ConstBondIterator_()
: RDKit::ConstBondIterator_
- container
: Rankers::argless< T >
- CONTAINER_TYPE
: Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
- continuousHighlight
: RDKit::MolDrawOptions
- contourColour
: RDKit::MolDraw2DUtils::ContourParams
- contourWidth
: RDKit::MolDraw2DUtils::ContourParams
- contribs()
: ForceFields::ForceField
- ConvertAtomTexts
: RDKit::StructureCheck::StructCheckerOptions
- ConvertSText
: RDKit::StructureCheck::StructCheckerOptions
- coordMap
: RDKit::DGeomHelpers::EmbedParameters
- copy()
: DistGeom::ChiralViolationContrib
, DistGeom::DistViolationContrib
, DistGeom::FourthDimContrib
, ForceFields::CrystalFF::TorsionAngleContribM6
, ForceFields::ForceFieldContrib
, ForceFields::MMFF::AngleBendContrib
, ForceFields::MMFF::AngleConstraintContrib
, ForceFields::MMFF::BondStretchContrib
, ForceFields::MMFF::DistanceConstraintContrib
, ForceFields::MMFF::EleContrib
, ForceFields::MMFF::OopBendContrib
, ForceFields::MMFF::PositionConstraintContrib
, ForceFields::MMFF::StretchBendContrib
, ForceFields::MMFF::TorsionAngleContrib
, ForceFields::MMFF::TorsionConstraintContrib
, ForceFields::MMFF::VdWContrib
, ForceFields::UFF::AngleBendContrib
, ForceFields::UFF::AngleConstraintContrib
, ForceFields::UFF::BondStretchContrib
, ForceFields::UFF::DistanceConstraintContrib
, ForceFields::UFF::InversionContrib
, ForceFields::UFF::PositionConstraintContrib
, ForceFields::UFF::TorsionAngleContrib
, ForceFields::UFF::TorsionConstraintContrib
, ForceFields::UFF::vdWContrib
, Queries::AndQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::EqualityQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::GreaterEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::GreaterQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::LessEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::LessQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::OrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::RangeQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::XOrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, RDGeom::Point2D
, RDGeom::Point3D
, RDGeom::Point
, RDGeom::PointND
, RDKit::Atom
, RDKit::AtomKekulizeException
, RDKit::AtomMonomerInfo
, RDKit::AtomPDBResidueInfo
, RDKit::AtomRingQuery
, RDKit::AtomSanitizeException
, RDKit::AtomValenceException
, RDKit::Bond
, RDKit::CartesianProductStrategy
, RDKit::EnumerationStrategyBase
, RDKit::EvenSamplePairsStrategy
, RDKit::ExclusionList
, RDKit::FilterHierarchyMatcher
, RDKit::FilterMatcherBase
, RDKit::FilterMatchOps::And
, RDKit::FilterMatchOps::Not
, RDKit::FilterMatchOps::Or
, RDKit::HasPropQuery< TargetPtr >
, RDKit::HasPropWithValueQuery< TargetPtr, T >
, RDKit::HasPropWithValueQuery< TargetPtr, ExplicitBitVect >
, RDKit::HasPropWithValueQuery< TargetPtr, std::string >
, RDKit::KekulizeException
, RDKit::MolSanitizeException
, RDKit::MolStandardize::FragmentValidation
, RDKit::MolStandardize::IsotopeValidation
, RDKit::MolStandardize::MolVSValidations
, RDKit::MolStandardize::NeutralValidation
, RDKit::MolStandardize::NoAtomValidation
, RDKit::QueryAtom
, RDKit::QueryBond
, RDKit::RandomSampleAllBBsStrategy
, RDKit::RandomSampleStrategy
, RDKit::RecursiveStructureQuery
, RDKit::SmartsMatcher
- CopyComplete
: RDKit::FMCS::Seed
- countMatches()
: RDKit::SubstructLibrary
- crd
: ForceFields::MMFF::MMFFProp
- createFromParent()
: RDKit::FMCS::Seed
- createPartialBond()
: RDKit::RWMol
- CRIPPEN
: RDKit::MolAlign::O3A
- CrippenParamCollection()
: RDKit::Descriptors::CrippenParamCollection
- crossProduct()
: RDGeom::Point3D
- current
: RDKit::CXXAtomIterator< Graph, Vertex >::CXXAtomIter
, RDKit::CXXBondIterator< Graph, Edge >::CXXBondIter
- CXXAtomIter()
: RDKit::CXXAtomIterator< Graph, Vertex >::CXXAtomIter
- CXXAtomIterator()
: RDKit::CXXAtomIterator< Graph, Vertex >
- CXXBondIter()
: RDKit::CXXBondIterator< Graph, Edge >::CXXBondIter
- CXXBondIterator()
: RDKit::CXXBondIterator< Graph, Edge >