Class ProteinSequenceClusterer
- java.lang.Object
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- org.biojava.nbio.structure.symmetry.core.ProteinSequenceClusterer
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public class ProteinSequenceClusterer extends java.lang.Object
Represents a set of non-identical protein sequences.
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Constructor Summary
Constructors Constructor Description ProteinSequenceClusterer(Structure structure1, Structure structure2, QuatSymmetryParameters parameters)
ProteinSequenceClusterer(Structure structure, QuatSymmetryParameters parameters)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getNucleicAcidChainCount()
int
getProteinChainCount()
java.util.List<SequenceAlignmentCluster>
getSequenceAlignmentClusters()
static void
sortSequenceClustersBySize(java.util.List<SequenceAlignmentCluster> clusters)
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Constructor Detail
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ProteinSequenceClusterer
public ProteinSequenceClusterer(Structure structure, QuatSymmetryParameters parameters)
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ProteinSequenceClusterer
public ProteinSequenceClusterer(Structure structure1, Structure structure2, QuatSymmetryParameters parameters)
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Method Detail
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getSequenceAlignmentClusters
public java.util.List<SequenceAlignmentCluster> getSequenceAlignmentClusters()
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getProteinChainCount
public int getProteinChainCount()
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getNucleicAcidChainCount
public int getNucleicAcidChainCount()
- Returns:
- the nucleicAcidChainCount
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sortSequenceClustersBySize
public static void sortSequenceClustersBySize(java.util.List<SequenceAlignmentCluster> clusters)
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