Class CallablePairwiseSequenceAligner<S extends Sequence<C>,​C extends Compound>

  • Type Parameters:
    S - each Sequence of the alignment pair is of type S
    C - each element of an AlignedSequence is a Compound of type C
    All Implemented Interfaces:
    java.util.concurrent.Callable<SequencePair<S,​C>>

    public class CallablePairwiseSequenceAligner<S extends Sequence<C>,​C extends Compound>
    extends java.lang.Object
    implements java.util.concurrent.Callable<SequencePair<S,​C>>
    Implements a concurrency wrapper for a PairwiseSequenceAligner.
    Author:
    Mark Chapman
    • Constructor Detail

      • CallablePairwiseSequenceAligner

        public CallablePairwiseSequenceAligner​(PairwiseSequenceAligner<S,​C> psa)
        Creates a pairwise sequence alignment task for simplified parallel execution.
        Parameters:
        psa - already initialized pairwise sequence aligner
    • Method Detail

      • call

        public SequencePair<S,​C> call()
        Specified by:
        call in interface java.util.concurrent.Callable<S extends Sequence<C>>