Class GeneChromosomePosition
- java.lang.Object
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- org.biojava.nbio.genome.parsers.genename.GeneChromosomePosition
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Comparable<GeneChromosomePosition>
public class GeneChromosomePosition extends java.lang.Object implements java.lang.Comparable<GeneChromosomePosition>, java.io.Serializable
- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description GeneChromosomePosition()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
compareTo(GeneChromosomePosition o)
java.lang.Integer
getCdsEnd()
java.lang.Integer
getCdsStart()
java.lang.String
getChromosome()
int
getExonCount()
java.util.List<java.lang.Integer>
getExonEnds()
java.util.List<java.lang.Integer>
getExonStarts()
java.lang.String
getGenebankId()
java.lang.String
getGeneName()
java.lang.Character
getOrientation()
java.lang.Integer
getTranscriptionEnd()
java.lang.Integer
getTranscriptionStart()
void
setCdsEnd(java.lang.Integer cdsEnd)
void
setCdsStart(java.lang.Integer cdsStart)
void
setChromosome(java.lang.String chromosome)
void
setExonCount(int exonCount)
void
setExonEnds(java.util.List<java.lang.Integer> exonEnds)
void
setExonStarts(java.util.List<java.lang.Integer> exonStarts)
void
setGenebankId(java.lang.String genebankId)
void
setGeneName(java.lang.String geneName)
void
setOrientation(java.lang.Character orientation)
void
setTranscriptionEnd(java.lang.Integer transcriptionEnd)
void
setTranscriptionStart(java.lang.Integer transcriptionStart)
java.lang.String
toString()
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Method Detail
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getGeneName
public java.lang.String getGeneName()
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setGeneName
public void setGeneName(java.lang.String geneName)
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getGenebankId
public java.lang.String getGenebankId()
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setGenebankId
public void setGenebankId(java.lang.String genebankId)
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getChromosome
public java.lang.String getChromosome()
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setChromosome
public void setChromosome(java.lang.String chromosome)
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getOrientation
public java.lang.Character getOrientation()
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setOrientation
public void setOrientation(java.lang.Character orientation)
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getTranscriptionStart
public java.lang.Integer getTranscriptionStart()
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setTranscriptionStart
public void setTranscriptionStart(java.lang.Integer transcriptionStart)
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getTranscriptionEnd
public java.lang.Integer getTranscriptionEnd()
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setTranscriptionEnd
public void setTranscriptionEnd(java.lang.Integer transcriptionEnd)
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getCdsStart
public java.lang.Integer getCdsStart()
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setCdsStart
public void setCdsStart(java.lang.Integer cdsStart)
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getCdsEnd
public java.lang.Integer getCdsEnd()
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setCdsEnd
public void setCdsEnd(java.lang.Integer cdsEnd)
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getExonCount
public int getExonCount()
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setExonCount
public void setExonCount(int exonCount)
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getExonStarts
public java.util.List<java.lang.Integer> getExonStarts()
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setExonStarts
public void setExonStarts(java.util.List<java.lang.Integer> exonStarts)
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getExonEnds
public java.util.List<java.lang.Integer> getExonEnds()
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setExonEnds
public void setExonEnds(java.util.List<java.lang.Integer> exonEnds)
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compareTo
public int compareTo(GeneChromosomePosition o)
- Specified by:
compareTo
in interfacejava.lang.Comparable<GeneChromosomePosition>
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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