Class BiologicalAssemblyBuilder
- java.lang.Object
-
- org.biojava.nbio.structure.quaternary.BiologicalAssemblyBuilder
-
public class BiologicalAssemblyBuilder extends java.lang.Object
Reconstructs the quaternary structure of a protein from an asymmetric unit- Author:
- Peter Rose, Andreas Prlic
-
-
Constructor Summary
Constructors Constructor Description BiologicalAssemblyBuilder()
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.ArrayList<BiologicalAssemblyTransformation>
getBioUnitTransformationList(PdbxStructAssembly psa, java.util.List<PdbxStructAssemblyGen> psags, java.util.List<PdbxStructOperList> operators)
Returns a list of transformation matrices for the generation of a macromolecular assembly for the specified assembly Id.Structure
rebuildQuaternaryStructure(Structure asymUnit, java.util.List<BiologicalAssemblyTransformation> transformations)
-
-
-
Method Detail
-
rebuildQuaternaryStructure
public Structure rebuildQuaternaryStructure(Structure asymUnit, java.util.List<BiologicalAssemblyTransformation> transformations)
-
getBioUnitTransformationList
public java.util.ArrayList<BiologicalAssemblyTransformation> getBioUnitTransformationList(PdbxStructAssembly psa, java.util.List<PdbxStructAssemblyGen> psags, java.util.List<PdbxStructOperList> operators)
Returns a list of transformation matrices for the generation of a macromolecular assembly for the specified assembly Id.- Parameters:
assemblyId
- Id of the macromolecular assembly to be generated- Returns:
- list of transformation matrices to generate macromolecular assembly
-
-