Class GFF3Writer


  • public class GFF3Writer
    extends java.lang.Object
    Author:
    Scooter Willis
    • Constructor Summary

      Constructors 
      Constructor Description
      GFF3Writer()  
    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static void main​(java.lang.String[] args)  
      void write​(java.io.OutputStream outputStream, java.util.LinkedHashMap<java.lang.String,​ChromosomeSequence> chromosomeSequenceList)
      Output gff3 format for a DNA Sequence
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • GFF3Writer

        public GFF3Writer()
    • Method Detail

      • write

        public void write​(java.io.OutputStream outputStream,
                          java.util.LinkedHashMap<java.lang.String,​ChromosomeSequence> chromosomeSequenceList)
                   throws java.lang.Exception
        Output gff3 format for a DNA Sequence
        Parameters:
        fileName -
        chromosomeSequence -
        Throws:
        java.lang.Exception
      • main

        public static void main​(java.lang.String[] args)
                         throws java.lang.Exception
        Throws:
        java.lang.Exception