Class BCF2FieldWriter.FTGenotypesWriter
- java.lang.Object
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- htsjdk.variant.variantcontext.writer.BCF2FieldWriter
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- htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
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- htsjdk.variant.variantcontext.writer.BCF2FieldWriter.StaticallyTypeGenotypesWriter
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- htsjdk.variant.variantcontext.writer.BCF2FieldWriter.FTGenotypesWriter
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- Enclosing class:
- BCF2FieldWriter
public static class BCF2FieldWriter.FTGenotypesWriter extends BCF2FieldWriter.StaticallyTypeGenotypesWriter
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Nested Class Summary
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Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter
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Constructor Summary
Constructors Constructor Description FTGenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)
protected int
numElements(VariantContext vc, Genotype g)
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Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
start
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Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
done, getField, getFieldEncoder, getHeader, toString
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Constructor Detail
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FTGenotypesWriter
public FTGenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
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Method Detail
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addGenotype
public void addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g) throws IOException
- Overrides:
addGenotype
in classBCF2FieldWriter.GenotypesWriter
- Throws:
IOException
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numElements
protected int numElements(VariantContext vc, Genotype g)
- Overrides:
numElements
in classBCF2FieldWriter.GenotypesWriter
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