Class WholeReadClippedFilter

  • All Implemented Interfaces:
    SamRecordFilter

    public class WholeReadClippedFilter
    extends Object
    implements SamRecordFilter
    Filter SAMRecords so that only those that have at least one un-clipped base are returned. $Id$
    • Constructor Detail

      • WholeReadClippedFilter

        public WholeReadClippedFilter()
    • Method Detail

      • filterOut

        public boolean filterOut​(SAMRecord record)
        Determines whether a SAMRecord matches this filter
        Specified by:
        filterOut in interface SamRecordFilter
        Parameters:
        record - the SAMRecord to evaluate
        Returns:
        true if the SAMRecord matches the filter, and should be filtered out, otherwise false
      • filterOut

        public boolean filterOut​(SAMRecord first,
                                 SAMRecord second)
        Determines whether a paired of SAMRecord matches this filter
        Specified by:
        filterOut in interface SamRecordFilter
        Parameters:
        first - the first SAMRecord to evaluate
        second - the second SAMRecord to evaluate
        Returns:
        true if the SAMRecords matches the filter, otherwise false