Interface CRAMIndexer

    • Method Detail

      • processContainer

        void processContainer​(Container container,
                              ValidationStringency validationStringency)
        Create index entries for a single container.
        Parameters:
        container - the container to index
        validationStringency - stringency for validating records (used when processing multi-reference slices, since creating an index on a multi-ref slices requires actually decoding the records in order to resove the constituent reference spans}
      • finish

        void finish()
        Finish creating the index by writing the accumulated entries out.