Package htsjdk.samtools.sra
Class ReferenceCache
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- htsjdk.samtools.sra.ReferenceCache
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public class ReferenceCache extends Object
That is a thread-safe wrapper for a list of cache Reference objects. Those objects can be used from different threads without issues, however to load and save a Reference object, we need to acquire a lock. Created by andrii.nikitiuk on 10/28/15.
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Constructor Summary
Constructors Constructor Description ReferenceCache(ngs.ReadCollection run, SAMFileHeader virtualHeader)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description ngs.Reference
get(int referenceIndex)
This method returns Reference objects by reference indexes in SAM header Those objects do not maintain thread safety
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Constructor Detail
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ReferenceCache
public ReferenceCache(ngs.ReadCollection run, SAMFileHeader virtualHeader)
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