Class BartonSternberg

  • All Implemented Interfaces:
    MultipleAligner

    public class BartonSternberg
    extends java.lang.Object
    implements MultipleAligner
    Version:
    $Id: BartonSternberg.java 1025 2009-10-23 01:29:48Z matt_kearse $ Implements the BartonSternberg multiple sequence alignment algorithm. Note: this is not yet complete, it does not create an initial ordering in which to add sequences to the profile. Also, after creating the profile, it just removes and adds each sequence back into the profile a fixed number of times(currently two).
    Author:
    Matt Kearse