Uses of Interface
jebl.util.Attributable
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Packages that use Attributable Package Description jebl.evolution.alignments jebl.evolution.graphs jebl.evolution.sequences jebl.evolution.taxa jebl.evolution.trees jebl.util -
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Uses of Attributable in jebl.evolution.alignments
Classes in jebl.evolution.alignments that implement Attributable Modifier and Type Class Description class
ConsensusSequence
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Uses of Attributable in jebl.evolution.graphs
Subinterfaces of Attributable in jebl.evolution.graphs Modifier and Type Interface Description interface
Edge
Represents a node in a graph or tree.interface
Graph
interface
Node
Represents a node in a graph or tree. -
Uses of Attributable in jebl.evolution.sequences
Subinterfaces of Attributable in jebl.evolution.sequences Modifier and Type Interface Description interface
Sequence
A biomolecular sequence.Classes in jebl.evolution.sequences that implement Attributable Modifier and Type Class Description class
BasicSequence
A default implementation of the Sequence interface.class
CanonicalSequence
A default implementation of the Sequence interface that converts sequence characters to States such that calling getString() will always return uppercase residues with nucleotide U residues converted to Tclass
CodonSequence
A codon implementation of the Sequence interface.class
FilteredSequence
class
GaplessSequence
class
TranslatedSequence
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Uses of Attributable in jebl.evolution.taxa
Classes in jebl.evolution.taxa that implement Attributable Modifier and Type Class Description class
Taxon
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Uses of Attributable in jebl.evolution.trees
Subinterfaces of Attributable in jebl.evolution.trees Modifier and Type Interface Description interface
RootedTree
A tree with a root (node with maximum height).interface
Tree
A rooted or unrooted tree.Classes in jebl.evolution.trees that implement Attributable Modifier and Type Class Description class
BaseEdge
Common implementation of Attributable interface used by Nodes.class
BaseNode
Common implementation of Attributable interface used by Nodes.class
CompactRootedTree
A memory efficient rooted tree.class
FilteredRootedTree
class
MutableRootedTree
A simple rooted tree providing some ability to manipulate the tree.class
ReRootedTree
class
RootedFromUnrooted
Root an unrooted tree.class
RootedSubtree
A simple, immutable rooted tree implementation that is a subtree of an existing tree subtending a specified set of taxa..class
SimpleRootedTree
A simple, and initially immutable rooted tree implementation.class
SimpleTree
A basic implementation on an unrooted tree.class
SortedRootedTree
class
TransformedRootedTree
This RootedTree class wraps another RootedTree and transforms the branch lengths and node heights using various functions. -
Uses of Attributable in jebl.util
Classes in jebl.util that implement Attributable Modifier and Type Class Description class
AttributableHelper
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