Uses of Interface
jebl.evolution.coalescent.IntervalList
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Packages that use IntervalList Package Description jebl.evolution.coalescent -
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Uses of IntervalList in jebl.evolution.coalescent
Classes in jebl.evolution.coalescent that implement IntervalList Modifier and Type Class Description class
Intervals
A concrete class for a set of coalescent intevals.Methods in jebl.evolution.coalescent with parameters of type IntervalList Modifier and Type Method Description static double
Coalescent. calculateAnalyticalLogLikelihood(IntervalList intervals)
Calculates the log likelihood of this set of coalescent intervals, using an analytical integration over theta.static double
Coalescent. calculateLogLikelihood(IntervalList intervals, DemographicFunction demographicFunction)
Calculates the log likelihood of this set of coalescent intervals, given a demographic model.static int
IntervalList.Utils. getLineageCount(IntervalList intervals, double t)
Constructors in jebl.evolution.coalescent with parameters of type IntervalList Constructor Description Coalescent(IntervalList intervals, DemographicFunction demographicFunction)
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