API Documentation¶
nibabel |
Read / write access to some common neuroimaging file formats |
File Formats¶
analyze |
Read / write access to the basic Mayo Analyze format |
spm2analyze |
Read / write access to SPM2 version of analyze image format |
spm99analyze |
Read / write access to SPM99 version of analyze image format |
cifti2 |
CIFTI-2 format IO |
gifti |
GIfTI format IO |
freesurfer |
Reading functions for freesurfer files |
minc1 |
Read MINC1 format images |
minc2 |
Preliminary MINC2 support |
nicom |
DICOM reader |
nifti1 |
Read / write access to NIfTI1 image format |
nifti2 |
Read / write access to NIfTI2 image format |
ecat |
Read ECAT format images |
parrec |
Read images in PAR/REC format. |
streamlines |
Multiformat-capable streamline format read / write interface |
trackvis |
Read and write trackvis files (old interface) |
Image Utilities¶
eulerangles |
Module implementing Euler angle rotations and their conversions |
funcs |
Processor functions for images |
imageclasses |
Define supported image classes and names |
imageglobals |
Defaults for images and headers |
loadsave |
Utilities to load and save image objects |
orientations |
Utilities for calculating and applying affine orientations |
quaternions |
Functions to operate on, or return, quaternions. |
spatialimages |
A simple spatial image class |
volumeutils |
Utility functions for analyze-like formats |
Float / integer conversion¶
arraywriters |
Array writer objects |
casting |
Utilties for casting numpy values in various ways |
System utilities¶
data |
Utilities to find files from NIPY data packages |
environment |
Settings from the system environment relevant to NIPY |
Miscellaneous Helpers¶
arrayproxy |
Array proxy base class |
affines |
Utility routines for working with points and affine transforms |
batteryrunners |
Battery runner classes and Report classes |
data |
Utilities to find files from NIPY data packages |
dft |
DICOM filesystem tools |
fileholders |
Fileholder class |
filename_parser |
Create filename pairs, triplets etc, with expected extensions |
fileslice |
Utilities for getting array slices out of file-like objects |
onetime |
Descriptor support for NIPY. |
openers |
Context manager openers for various fileobject types |
optpkg |
Routines to support optional packages |
rstutils |
ReStructured Text utilities |
tmpdirs |
Contexts for with statement providing temporary directories |
tripwire |
Class to raise error for missing modules or other misfortunes |
wrapstruct |
Class to wrap numpy structured array |
Alphabetical API reference¶
- API Reference
nibabel
_h5py_compat
_version
affines
analyze
arrayproxy
arraywriters
batteryrunners
benchmarks
brikhead
casting
cifti2
cmdline
data
dataobj_images
deprecated
deprecator
dft
ecat
environment
eulerangles
filebasedimages
fileholders
filename_parser
fileslice
fileutils
freesurfer
funcs
gifti
imageclasses
imageglobals
keywordonly
loadsave
minc1
minc2
mriutils
nicom
nifti1
nifti2
onetime
openers
optpkg
orientations
parrec
processing
py3k
pydicom_compat
quaternions
rstutils
spaces
spatialimages
spm2analyze
spm99analyze
streamlines
tmpdirs
trackvis
tripwire
viewers
volumeutils
wrapstruct
xmlutils