BedTool.
remove_invalid
Remove invalid features that may break BEDTools programs.
>>> a = pybedtools.BedTool("chr1 10 100\nchr1 10 1", ... from_string=True) >>> print(a.remove_invalid()) #doctest: +NORMALIZE_WHITESPACE chr1 10 100 <BLANKLINE>
pybedtools
BedTool
BEDTools
pybedtools.contrib