pybedtools.scripts.intersection_matrix

Create a matrix of many pairwise intersections; see pybedtools.contrib.IntersectionMatrix for more flexibility

Functions

actual_intersection(a, b)

create_matrix(beds, func[, verbose])

enrichment_score(a, b, genome_fn[, …])

frac_of_a(a, b)

get_name(fname)

main()

Creates a pairwise matrix containing overlapping feature counts for many BED files