TreeNode.
read
(file, format=None, **kwargs)[source]¶Create a new TreeNode
instance from a file.
This is a convenience method for skbio.io.registry.read()
. For
more information about the I/O system in scikit-bio, please see
skbio.io
.
Supported file formats include:
'newick'
(skbio.io.format.newick
)
file (openable (filepath, URL, filehandle, etc.)) – The location to read the given format. Something that is
understood by skbio.io.util.open()
. Filehandles are not
automatically closed, it is the responsibility of the caller.
format (str, optional) – The format must be a format name with a reader for TreeNode
.
If a format is not provided or is None, it will attempt to
guess the format.
kwargs (dict, optional) – Keyword arguments passed to skbio.io.registry.read()
and
the file format reader for TreeNode
.
A new instance.