Protein.
match_frequency
(other, relative=False)[source]¶Return count of positions that are the same between two sequences.
State: Stable as of 0.4.0.
other (str, Sequence, or 1D np.ndarray (np.uint8 or '|S1')) – Sequence to compare to.
relative (bool, optional) – If True
, return the relative frequency of matches instead of
the count.
Number of positions that are the same between the sequences. This
will be an int
if relative is False
and a float
if relative is True
.
int or float
ValueError – If the sequences are not the same length.
TypeError – If other is a Sequence
object with a different type than this
sequence.
See also
Examples
>>> from skbio import Sequence
>>> s = Sequence('GGUC')
>>> t = Sequence('AGUC')
>>> s.match_frequency(t)
3
>>> s.match_frequency(t, relative=True)
0.75