TreeNode.
from_linkage_matrix
(linkage_matrix, id_list)[source]¶Return tree from SciPy linkage matrix.
State: Experimental as of 0.4.0.
linkage_matrix (ndarray) – A SciPy linkage matrix as returned by scipy.cluster.hierarchy.linkage
id_list (list) – The indices of the id_list will be used in the linkage_matrix
An unrooted bifurcated tree
See also
scipy.cluster.hierarchy.linkage()