Sequence.
matches
(other)[source]¶Find positions that match with another sequence.
State: Stable as of 0.4.0.
other (str, Sequence, or 1D np.ndarray (np.uint8 or '|S1')) – Sequence to compare to.
Boolean vector where True
at position i
indicates a match
between the sequences at their positions i
.
1D np.ndarray (bool)
ValueError – If the sequences are not the same length.
TypeError – If other is a Sequence
object with a different type than this
sequence.
See also
Examples
>>> from skbio import Sequence
>>> s = Sequence('GGUC')
>>> t = Sequence('GAUU')
>>> s.matches(t)
array([ True, False, True, False], dtype=bool)