TabularMSA.
write
(file, format='fasta', **kwargs)[source]¶Write an instance of TabularMSA
to a file.
This is a convenience method for skbio.io.registry.write()
.
For more information about the I/O system in scikit-bio, please
see skbio.io
.
Supported file formats include:
'clustal'
(skbio.io.format.clustal
)
'fasta'
(skbio.io.format.fasta
)
'fastq'
(skbio.io.format.fastq
)
'phylip'
(skbio.io.format.phylip
)
'stockholm'
(skbio.io.format.stockholm
)
file (openable (filepath, URL, filehandle, etc.)) – The location to write the given format into. Something
that is understood by skbio.io.util.open()
. Filehandles
are not automatically closed, it is the responsibility of the
caller.
format (str) – The format must be a registered format name with a writer for
TabularMSA
.
Default is ‘fasta’.
kwargs (dict, optional) – Keyword arguments passed to skbio.io.registry.write()
and the file format writer.