skbio.io.util.
open
(file, mode='r', encoding=None, errors=None, newline=None, compression='auto', compresslevel=9)[source]¶Convert input into a filehandle.
State: Stable as of 0.4.0.
Supported inputs:
type |
can read |
can write |
source type |
---|---|---|---|
file path |
True |
True |
Binary |
URL |
True |
False |
Binary |
|
True |
True |
Text |
|
True |
True |
Text |
|
True |
True |
Binary |
|
True |
True |
Text |
|
True |
False |
Binary |
|
False |
True |
Binary |
|
True |
True |
Binary |
|
True |
True |
Binary |
|
True |
True |
Binary |
Note
When reading a list of unicode (str) lines, the input for
newline is used to determine the number of lines in the resulting file
handle, not the number of elements in the list. This is to allow
composition with file.readlines()
.
file (filepath, url, filehandle, list) – The input to convert to a filehandle.
mode ({'r', 'w'}, optional) – Whether to return a readable or writable file. Conversely, this does not imply that the returned file will be unwritable or unreadable. To get a binary filehandle set encoding to binary.
encoding (str, optional) – The encoding scheme to use for the file. If set to ‘binary’, no bytes
will be translated. Otherwise this matches the behavior of
io.open()
.
errors (str, optional) – Specifies how encoding and decoding errors are to be handled. This has
no effect when encoding is binary (as there can be no errors).
Otherwise this matches the behavior of io.open()
.
newline ({None, "", '\n', '\r\n', '\r'}, optional) – Matches the behavior of io.open()
.
compression ({'auto', 'gzip', 'bz2', None}, optional) – Will compress or decompress file depending on mode. If ‘auto’ then determining the compression of the file will be attempted and the result will be transparently decompressed. ‘auto’ will do nothing when writing. Other legal values will use their respective compression schemes. compression cannot be used with a text source.
compresslevel (int (0-9 inclusive), optional) – The level of compression to use, will be passed to the appropriate compression handler. This is only used when writing.
filehandle – When encoding=’binary’ an io.BufferedReader
or
io.BufferedWriter
will be returned depending on mode.
Otherwise an implementation of io.TextIOBase
will be returned.
Note
Any underlying resources needed to create filehandle are managed transparently. If file was closeable, garbage collection of filehandle will not close file. Calling close on filehandle will close file. Conversely calling close on file will cause filehandle to reflect a closed state. This does not mean that a `flush` has occured for `filehandle`, there may still have been data in its buffer! Additionally, resources may not have been cleaned up properly, so ALWAYS call `close` on `filehandle` and NOT on `file`.
io.TextIOBase or io.BufferedReader/Writer