IntervalMetadata.
query
(bounds=None, metadata=None)[source]¶Yield Interval
object with the bounds and attributes.
State: Experimental as of 0.5.1.
The Interval
objects must meet both requirements: 1) overlap
with any of the spans specified by bounds
; 2) satisfy
metadata
specification. For instance, you can identify
all the recA genes that overlap with (10, 100) or (900, 1000)
with this code interval_metadata.query([(10, 100),
(900, 1000)], {'gene': 'recA'})
.
bounds (iterable of tuples of int pair, optional) – Specifies bounds to look for the Interval
objects. An satisfying interval feature only need to overlap with
one bound. Default (None
) means all Intervals
meet
this requirement.
metadata (dict, optional) – A dictionary of key word attributes associated with the
Interval
object. It specifies what metadata keywords and
values to look for. Default (None
) means all Intervals
meet this requirement.
Interval – Interval
object satisfying the search criteria.